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Publications - peer reviewed international journals
Anne de la Rochefordiere, Maud Kamal, Anne Floquet, Laurence Thomas, Peter Petrow, Thierry Petit,
Marius Pop, Michel Fabbro, Christine Kerr, Florence Joly, Karim Hamond, Sophie Maillard, Hervé Curé, Béatrice Weber,
Claire Brunaud, Mathieu Minsat, Laurence Gonzague, Dominique Berton-Rigaud, Laurence Gladieff, Karine Peignaux,
Virginie Bernard, Quentin Leroy, Ivan Bieche, Ana Tereza Nadan, Virginie Fourchotte, Alhassane Diallo,
Benard Asselain, P Tresca, S Armanet , Philippe Beuzeboc and Suzy M Scholl.
PIK3CA pathway mutations predictive of poor response following standard radio chemotherapy
+/- Cetuximab in cervical cancer patients.
Christophe Le Tourneau, Xavier Paoletti, Nicolas Servant, Ivan Bièche, David Gentien, Thomas Rio Frio,
Anne Vincent-Salomon, Vincent Servois, Julien Romejon, Odette Mariani, Virginie Bernard, Philippe Huppé, Gaëlle Pierron,
Fabrice Mulot, Céline Callens, Jennifer Wong, Cécile Mauborgne, Etienne Rouleau, Cécile Reyes, Laurence Escalup, Emmanuel Mitry,
Olivier Trédan, Jean-Pierre Delord,
Mario Campone, Anthony Goncalves, Nicolas Isambert, Céline Gavoille, Maud Kamal.
Randomized proof-of-concept phase II trial comparing targeted therapy based
on tumor molecular profiling versus conventional therapy in patients with refractory
cancer: Results of the feasibility part of the SHIVA trial.
Nicolas Servant, Julien Roméjon, Pierre Gestraud, Philippe La Rosa,
Georges Lucotte, Séverine Lair, Virginie Bernard, Bruno Zeitouni, Fanny Coffin,
Gérôme Jules-Clément, Florent Yvon, Alban Lermine, Patrick Poullet, Stéphane Liva, Stuart Pook, Tatiana Popova,
Camille Barette, François Prud'homme, Jean-Gabriel Dick, Maud Kamal, Christophe Le Tourneau,
Emmanuel Barillot and Philippe Hupé.
Bioinformatics for Precision Medicine in Oncology:
principles and application to the SHIVA clinical trial
.
Frontiers in Genetics
[9]
Gudrun Schleiermacher, Niloufar Javanmardi, Virginie Bernard, Quentin Leroy,
Julie Cappo, Thomas Rio Frio, Gaelle Pierron, Eve Lapouble, Valérie Combaret,
Frank Speleman, Bram de Wilde8, Anna Djos, Ingrid Øra, Fredrik Hedborg,
Catarina Träger, Britt-Marie Holmqvist, Jonas Abrahamsson, Michel
Peuchmaur, Jean Michon, Isabelle Janoueix-Lerosey, Per Kogner, Olivier
Delattre and Tommy Martinsson.
Emergence of new ALK mutations at relapse of neuroblastoma
Journal of Clinical Oncology
Impact factor 18.04 (2013)
[8]
Clara van Karnebeek, Sly WS, Colin J. Ross, Ramona Salvarinova, J. Yaplito-Lee, S. Santra, Casper Shyr, Gabriella A. Horvath, Patrice Eydoux,
Anna M. Lehman, Virginie Bernard, Theresa Newlove, Henri Ukpeh, A. Chakrapani, MA. Preece, S. Ball,
Pitt J, Hilary D. Vallance, Marion Coulter-Mackie, H. Nguyen,
LH. Zhang, AP. Bhavsar, Graham Sinclair, A. Waheed, Wyeth W. Wasserman and Sylvia Stockler-Ipsiroglu.
Mitochondrial carbonic anhydrase VA deficiency resulting from CA5A alterations presents with hyperammonemia in early childhood.
American Journal of Human Genetics,94(3):453-61 (2014).
Impact factor 11.202 (2013)
[7]
Carles Vilariño-Güell, Alex Rajput, Austen J Milnerwood, Brinda Shah, Chelsea Szu-Tu,
Joanne Trinh, Irene Yu, Mary Encarnacion, Lise N Munsie, Lucia Tapia, Emil K
Gustavsson, Patrick Chou, Igor Tatarnikov, Daniel M Evans, Frederick T Pishotta1, Mattia
Volta, Dayne Beccano-Kelly, Christina Thompson, Michelle K Lin, Holly E Sherman,
Heather J Han, Bruce L Guenther, Wyeth W Wasserman, Virginie Bernard, Colin J Ross,
Silke Appel-Cresswell, A Jon Stoess, Christopher A Robinson, Dennis W Dickson, Owen A
Ross, Zbigniew K Wszolek, Jan O Aasly, Ruey-Meei Wu, Faycal Hentati, Rachel A
Gibson, Peter S McPherson, Martine Girard, Michele Rajput, Ali H Rajput, Matthew J
Farrer
DNAJC13 mutations in Parkinson disease
Human molecular genetics,23(7):1794-801 (2013).
Impact factor 7.692 (2012)
[6]
Virginie Bernard and Magali Michaut
Explain Bioinformatics to Your Grandmother!
PLOS computational biology,9(10):e1003305 (2013).
Impact Factor 4.867 (2012)
[5] Sohrab P. Shah, Andrew Roth, Rodrigo Goya, Arusha Oloumi, Gavin Ha, Yongjun Zhao, Gulisa Turashvili,
Jiarui Ding, Kane Tse, Gholamreza Haffari, Ali Bashashati, Leah Prentice, Jaswinder Khattra, Virginie Bernard, Angela Burleigh,
Damian Yap, Andrew McPherson, Karey Shumansky, Anamaria Crisan, Ryan Giuliany, Alireza Heravi-Moussavi, Jamie Rosner, Daniel Lai,
Inanc Birol, Richard Varhol, Angela Tam, Noreen Dhalla, Thomas Zeng, Kevin Ma, Simon Chan, Malachi Griffith, Annie Moradian,
S. W. Grace Cheng, Gregg Morin, Peter Watson, Karen Gelmon, Stephen Chia, Suet-Feung Chin, Christina N. Curtis, Oscar Rueda,
Paul Pharoah, Sambasivarao Damaraju, John Mackey, Kelly Hoon, Timothy Harkins, Vasisht Tadigotla, Mahvash Sigaroudinia,
Philippe Gascard, Thea Tlsty, Joseph Costello, Irmtraud M. Meyer, Wyeth W. Wasserman, Connie J. Eaves, Steven Jones,
David Huntsman, Martin Hirst, Carlos Caldas, Marco A. Marra, Samuel Aparicio.
The clonal and mutational evolution spectrum of primary triple-negative breast cancers
Nature,4(7403):395-9 (2012).
Impact factor 36.28 (2012)
[4] Rebecca Hunt-Newbury, Virginie Bernard, and Wyeth W. Wasserman
Identification of cis-regulatory sequence variations in individual genome sequences
Genome Medicine,3(10):65 (2011).
Impact factor 2.65 (2011)
[3] Virginie Bernard, Alain Lecharny, Véronique Brunaud.
Improved detection of motifs with preferential location in promoters
Genome, 53:739 752 (2010).
Impact factor 1.713 (2010)
[2] Virginie Bernard, Véronique Brunaud, Alain Lecharny.
TC-motifs at the expected TATA-box position in plant genes: a
novel class of motifs involved in transcription regulation.
BMC Genomics 2010, 11:166 (2010, March 12th).
Impact factor 3.76 (2010)
[1] Gaëtan Lesca, Virginie Bernard, Muriel Bozon, Renaud Touraine,
Daniel Gérard, Patrick Edery, Alain Calender.
Mutation screening of the MECP2 gene in a large cohort of 613 fragile-X
negative patients with mental retardation.
European Journal of Medical Genetics. Volume 50, Issue 3, May-June 2007,
Pages 200-208.
Impact factor 1.857 (2007)
Articles in Peer-Reviewed Conference with Proceedings / Ph.D.
Nadia Bessoltane Bentahar, Virgine Bernard and Olivier Delattre. .
Gene containing Variant Annotation for Prioritization, a tool guiding clinicians toward candidate variations of interest.
JOBIM proceedings. 2013 Jul.
Virginie Bernard.
Relationship between regulatory element organization,
gene function and gene expression in Arabidopsis thaliana: toward
the regulatory element annotation.
Ph.D. thesis, university of Evry, 2009, dec, 11th
Virginie Bernard, Véronique Brunaud, Carine Serizet, Marie-Laure Martin Magniette,
Michel Caboche, Alain Lecharny.
Selection of candidate motifs for the regulation of Arabidopsis thaliana gene expression
based on topological criteria.
JOBIM proceedings. 2006 Jul. pages 17-28.
Posters
Legend: Poster at
- international conferences,
- local conferences.
[31] Jean Yves Pierga, Charles Decraene, Virginie Bernard, Maud Kamal, Anthony Blin,
Thomas Rio Frio, Nicolas Servant, FC Bidard, Xavier Paoletti, Marc-Henri Stern, Ronald Lebofsky, Christophe Le Tourneau
Monitoring of circulating tumor DNA in metastatic triple negative breast cancer patients undergoing chemotherapy.
European Society for Medical Oncology , Sept. 26th-30th 2014.
[30]
Angela Bellini, Virginie Bernard, Quentin Leroy, Thomas Rio Frio, Eve Lapouble, Nathalie Clement,
Hayet Hanbli, Gaëlle Pierron, Isabelle Janoueix-Lerosey, Jean Michon, Olivier Delattre and Gudrun Schleiermacher
High frequency of sub-clonal ALK mutations in Neuroblastoma.
ADVANCES IN NEUROBLASTOMA RESEARCH (ARN), May 2014.
[29] Léo Colmet Daage, Nadia Bessoltane, Virginie Bernard, Eve Lapouble, Nathalie Clement,
Angela Bellini, Gaëlle Pierron, Valérie Combaret, Jean Michon, Isabelle Janoueix-Lerosey, Olivier Delattre, Gudrun Schleiermacher
Whole-genome sequencing analysis of neuroblastoma'sclonal evolution.
ADVANCES IN NEUROBLASTOMA RESEARCH (ARN), May 2014.
[28] Jordan Madic, Anna Kiialainen, Francois-Clement Bidard, Fabian Birzele, Guillemette Ramey,
Emilie Vinolo, Quentin Leroy, Thomas Rio-Frio, Virginie Bernard, Alban Lermine, Inga Clausen, Nicolas Giroud, Roland Schmucki,
Carsten Horn, Olivia Spleiss, Olivier Lantz, Marc-Henri Stern, Jean-Yves Pierga, Martin Weisser, Ronald Lebofsky
Monitoring of circulating tumor DNA in metastatic triple negative breast cancer patients undergoing chemotherapy.
the 2014 ASCO Annual Meeting, May 30th-June 3rd 2014.
[27] Thomas Rio Frio, Nadia Bessoltane, Virginie Bernard, Anthony Blin, Sonia Lameiras,
Patricia Legoix-Né, Quentin Leroy, Elisabeth Hess, Alain Nicolas and Olivier Delattre.
The ICGex Next-Generation Sequencing Platform:
From Sequencing to Data Interpretation.
Scientific and Medical Days, Curie Institute, April 10th-11th 2014.
[26] Leo Colmet Daage*, Angela Bellini*, Nadia Bessoltane, Virginie Bernard, Quentin Leroy,
Thomas Rio Frio, Eve Lapouble, Hayet Hanbli, Nathalie Clement, Gaëlle Pierron,
Isabelle Janoueix-Lerosey, Jean Michon, Olivier Delattre and Gudrun Schleiermacher
Whole-genome sequencing analysis of neuroblastoma's clonal evolution.
Scientific and Medical Days, Curie Institute, April 10th-11th 2014.
[25] Suzy M Scholl, Maud Kamal, Anne Floquet, Thierry Petit, Thomas Rio-Frio, Virginie Bernard, Florence Joly,
Christine Kerr,
Mathieu Minsat, Sophie Maillard, Béatrice Weber, Alhassane Diallo, Virginie Fourchotte, Anne de la Rochefordiere and Ivan Bièche.
PIK3CA pathway mutations predictive of poor response following
standard radio chemotherapy +/- Cetuximab in cervical cancer patients.
Targeted Anticancer Therapies (TAT), March 5th-7th 2014.
[24] Quentin Leroy, Virgine Bernard, Anthony Blin, Thomas Rio Frio and Etienne Rouleau.
Semiconductor Sequencing and Multiplex PCR Enrichment: An efficient Synergy for Cancer Molecular Diagnosis.
5th Annual Next Generation Sequencing Congress, London, November 18th-19th 2013.
[23] Nadia Bessoltane Bentahar, Virgine Bernard and Olivier Delattre.
Gene containing Variant Annotation for Prioritization, a tool helping scientists to highlight candidate variants of interest.
ECCB ISMB, HiTSEQ 2013: High Throughput Sequencing Algorithms & Applications days, Berlin, July 19th-23rd 2013.
[22] Nadia Bessoltane Bentahar, Virgine Bernard and Olivier Delattre.
Gene containing Variant Annotation for Prioritization, a tool helping scientists to highlight candidate variants of interest.
ECCB ISMB, Berlin, July 19th-23rd 2013.
[21] Suzy M Scholl, Maud Kamal, Virginie Bernard, Thomas Rio-Frio, Quentin Leroy, Anne de la Rochefordiere,
Peter Petrow, Virginie Fourchotte, Corine Plancher, Marie-Eglantine Dujaric, Bernard Asselain, Xavier Sastre, Ana Tereza Nadan,
Anne Floquet, Thierry Petit, Michel Fabbro, Florence Joly, Cécile Guillemet, Sophie Maillard, Béatrice Weber,
Dominique Berton-Rigaud, Mathieu Minsat, Laurence Gladieff, Philippe Beuzeboc and Ivan Bieche.
.
Somatic mutations and responses to cetuximab in cervical cancer.
Charité-Mayo-Conference, Berlin, April 15th-18th 2013.
[20] Kamal M, Armanet S, Mulot F, Delon M, Mauborgne C, Plancher C, Mariani O, Vincent-Salomon A,
Gentien D, Reyes C, Rio Frio T, Leroy Q, Servant N, Bernard V, Romejon J, Hupe P, Gestraud P, LaRosa P, Lair S,
Popova T, Pierron G, Callens C, Rouleau E, Paoletti X, Bièche I, Medjbari M, Mitry E, Le Tourneau C.
Backstage of the SHIVA project.
Scientific and Medical Days, Curie Institute, April 10th-11th 2013.
[19] Nicolas Servant, Philippe La Rosa, Julien Romejon, Pierre Gestraud, Bruno Zeitouni, Séverine Lair, Georges Lucotte,
Virginie Bernard, Gérôme Jules-Clément, Fanny Coffin, François Prud’homme, Camille Barette, Jean-Gabriel Dick,
Maud Kamal, Christophe Le Tourneau, Emmanuel Barillot, Philippe Hupé
Personalized Medecine and Bioinformatics: Focus on the SHIVA clinical Trial.
Scientific and Medical Days, Curie Institute, April 10th-11th 2013.
[18] Nicolas Servant, Séverine Lair, Bruno Zeitouni, Alban Lermine, Valentina Boeva, Chong-jian Chen ,
Aurélie Teissandier, Romain Daveau, Virginie Bernard, Nadia Bessoltane Bentahar, Philippe Hupé, Emmanuel Barillot.
Bioinformatics Solutions for Next Generation Sequencing at Institut Curie.
Scientific and Medical Days, Curie Institute, April 10th-11th 2013.
[17] Casper Shyr, Virginie Bernard, David J. Arenillas, Wyeth W. Wasserman.
Genome analysis and clinical translation for patients with intellectual disability.
AMIA Clinical Research Informatics // Summit on Translational Bioinformatics", San Francisco, USA, March 19th-23th 2012.
[16] Virginie Bernard, Powell Patrick Cheng Tan, David J. Arenillas, Wyeth W. Wasserman.
Full-genome analysis and prediction of causal regulatory variations.
AMIA Clinical Research Informatics // Summit on Translational Bioinformatics", San Francisco, USA, March 19th-23th 2012.
[15] Virginie Bernard, Powell Patrick Cheng Tan, David J. Arenillas, Wyeth W. Wasserman
Prediction of regulatory sequence variations.
CMMT Scientific Symposium: Frontiers of Genetic Medicine" CMMT Scientific Symposium. Vancouver, Canada. Nov. 7th 2011.
[14] Virginie Bernard, David Arenillas, Wyeth W. Wasserman.
The functional importance and detection of regulatory sequence variants.
The 19th Annual International Conference on Intelligent Systems for Molecular Biology and
the 10th Annual European Conference on Computational Biology ISMB Vienna, Austria, 2011 July 17th-19st.
[13] Virginie Bernard, David Arenillas, Wyeth W. Wasserman.
The functional importance and detection of regulatory sequence variants.
ECCB/ISMB Special Interest Groups. SNP : Identification and annotation of
SNPs in the context of structure, function, and disease.
Vienna, Austria, 2011 July 15th.
[12] Patrick Tan, Virginie Bernard, Carles Vilarino-Guell, Matthew Farrer and Wyeth W. Wasserman.
Prediction of cis-regulatory variations causal for
Parkinson's disease.
Student Research Forum, Vancouver, Canada, 2011 June.
[11] Virginie Bernard, David Arenillas, Wyeth W. Wasserman.
Identification of Functional Sequence Variants Arising in Exome Analysis.
RECOMB 2011 Vancouver, BC, Canada, 2011 March 28th-31st.
[10] Xiao Y. Zhang, Dimas Yusuf, David Arenillas, Warren Cheung, Jonathan Lim, Casper Shyr, Virginie Bernard, Wyeth W. Wasserman.
Gene regulatory region variations potentially modulating the drug metabolism response.
CFRI Summer Student Research Program Poster Presentation,
Vancouver, BC, Canada, 2010 July 29th.
[9] Virginie Bernard, Wyeth W. Wasserman.
The cytoprotective NRF2 Pathway in Cancer Resistance and Lung Disorders.
ICRH's 2010 Young Investigators (YI) Forum (YI forum),
Vancouver, BC, Canada, 2010 May 5th to 7th.
[8] Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Classification of TATA-variants in higher plants: toward a functional annotation.
Conference 2009 URGV - Plant Genomics Research (Plant Genomics and Beyond),
Evry, France. 2009, Jul. 5th to 8th.
[7] Virginie Bernard, Véronique Brunaud, Alain Lecharny.
TATA-variant identification, characterization and functional classification in plant genomes.
The 17th Annual International Conference on Intelligent Systems for Molecular Biology and
the 7th Annual European Conference on Computational Biology (ISMB / ECCB),
Stockholm, Sweden. 2009, Jun. 27th to Jul. 2nd.
[6] Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Comparison of TATA-variant in higher plant genomes.
The 5th ISCB Student Council Symposium (SCS),
Stockholm, Sweden. 2009, Jun. 27th.
[5] Véronique Brunaud, Virginie Bernard, David Armisén,
Jean-Philippe Tamby, Séverine Gagnot, Sandra Derozier, Franck Samson,
Cécile Guichard, Marie-Laure Martin-Magniette, Alain Lecharny, Sebastien Aubourg.
Crossing genome and transcriptome : deciphering links between
structure and function in Arabidopsis thaliana genes.
French conference on Computational Biology and Bioinformatics, (JOBIM),
Nantes, France. 2009, Jun. 9th to 11th.
[4] Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Relationship between Arabidopsis thaliana regulatory element organization,
gene function and gene expression: toward the regulatory element annotation.
Doctoriale seminars, France. 2009, Mar. 2nd to 6th.
[3] Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Organisation of regulatory elements
in Arabidopsis thaliana core promoters: toward a functional annotation.
6th RECOMB Comparative Genomics Satellite Workshop, Paris, France. 2008, Oct. 13rd to 15th.
[2] Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Relationships between organisation of regulatory elements
in the promoter and gene function. Toward a functional annotation of Arabidopsis thaliana
promoters.
French conference on Computational Biology and Bioinformatics, (JOBIM),
Lille, France. 2008, Jun. 30th to Jul. 2nd.
[1] Aurélien Mazurie, Julien Lambert, Virginie Bernard, Jacques Mallet.
GeNetDB: a Software Platform for the Study of Genetic Regulatory Networks.
European Conferences on Computational Biology (ECCB), Paris, France.
2003, Sep. 27th to 30th.
Oral presentations
Legend: Oral presentations at
- conferences,
- invited seminars,
- interne seminars.
Virginie Bernard
Infrastructures and projects done at the Next Generation Sequencing platform, Institut Curie, Paris.
Rouen, France. 2013, November.
Virginie Bernard
Prediction of causal variations arising in protein encoding exons and in regulatory elements. Toward better analysis of whole genome projects.
Ingenuity Fall Roadshow. Paris, France. 2013, October.
Virginie Bernard
Results from an exome sequencing study of samples
enriched by the Illumina Nextera Exome solution
Advances in Genome Science - Next Generation Sequencing: Xtra easy. Xtremely fast - Illumina Seminar. Paris, France. 2013, April.
Thomas Rio Frio and Virginie Bernard
Prioritization of predicted variants.
Ingenuity Variant Analysis Workshop.
Paris, France. 2013, Mar.
Virginie Bernard, Patrick Tan, David J. Arenillas and Wyeth W. Wasserman.
Exome analysis and prediction of regulatory variations.
Centre for Molecular Medicine and Therapeutics - Seminar Series
TGIF. Vancouver, Canada. 2011, Sept.
Virginie Bernard, Patrick Tan, David J. Arenillas and Wyeth W. Wasserman.
The detection of regulatory sequence variants involved in human disorders.
Institute of Molecular and Cellular Pharmacology, invited by Dr. Pascal Barbry
(IPMC). Nice, France. 2011, Jul. 21st.
Virginie Bernard, David J. Arenillas, Dimas Yusuf and Wyeth W. Wasserman
Analysis of regulatory sequence variation for whole genome analysis
Oral Poster Presentation, invited by Dr. Steven Leard, (ISMB).
Vienna, Austria. 2011, Jul. 16th.
Virginie Bernard, David J. Arenillas, Dimas Yusuf and Wyeth W. Wasserman
Analysis of regulatory sequence variation for whole genome analysis
Special Interest Group, invited by Dr. Finn Drabløs, BioReg SIG: Bioinformatics for Regulatory Genomics.
Vienna, Austria. 2011, Jul. 15th.
Virginie Bernard, Wyeth W. Wasserman.
Exome analysis of patients with Parkinson disease: prediction of causal variations.
Seminar at the Centre for Molecular Medicine and Therapeutics
(CMMT). Vancouver, Canada. 2010, Jun.
Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Arabidopsis thaliana core promoter and gene expression.
M.Sc. 2 BioInformatics - EGOISt, Rouen, France.
2010, Jan.
Virginie Bernard.
Relationship between regulatory element organization,
gene function and gene expression in Arabidopsis thaliana: toward the regulatory element annotation.
Thesis defense, Evry, France.
2009, Dec, 11th.
Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Arabidopsis thaliana promoter architecture:
in silico prediction of a novel class of motifs specific to plant
and involved in the transcription regulation.
UCSC ,
invited by Dr. Grant Hartzog and Dr. Manny Ares,
Santa Cruz. 2009, Sep. 8th.
Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Arabidopsis thaliana promoter architecture:
in silico prediction of a novel class of motifs specific to plant
and involved in the transcription regulation.
BC Cancer Research Center,
invited by Dr. Dixie Mager,
Vancouver, Canada. 2009, Sep. 4th.
Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Arabidopsis thaliana promoter architecture:
in silico prediction of a novel class of motifs specific to plant
and involved in the transcription regulation.
PROOF Centre of Excellence
invited by Dr. Alice Mui, Dr. Raymond Ng and Dr. Robert Balshaw
Vancouver, Canada. 2009, Sep. 3rd.
Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Arabidopsis thaliana promoter architecture:
in silico prediction of a novel class of motifs specific to plant
and involved in the transcription regulation.
Canada's Michael Smith Genome Science Center,
invited by Dr. Steven Jones,
Vancouver, Canada. 2009, Sep. 2nd.
Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Arabidopsis thaliana promoter architecture:
in silico prediction of a novel class of motifs specific to plant
and involved in the transcription regulation.
USC, Norris Comprehensive Cancer Center,
invited by Dr. Michael Stallcup and Dr. Joseph Hacia,
Los Angeles, USA. 2009, Aug. 28th.
Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Arabidopsis thaliana promoter architecture:
in silico prediction of a novel class of motifs specific to plant
and involved in the transcription regulation.
UCLA, Department of Molecular, Cell and Developmental Biology,
invited by Dr. Joseph Pellegrini,
Los Angeles, USA. 2009, Aug. 27th.
Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Identification and characterization of Arabidopsis thaliana core promoters
Transcription Factor Binding Sites.
M.Sc. 2 BioInformatics - EGOISt, Rouen, France. 2008, Dec. 2nd.
Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Arabidopsis thaliana core promoter architecture and gene function.
Seminar at the Forest Improvement, Genetics and Physiology Unit
(UR AGPF), INRA Orléans, France. 2008, Jun. 9th.
Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Arabidopsis thaliana core promoter architecture.
11th meeting Young Researchers & Life Science
, Paris, France. 2008, Apr. 23rd to Apr. 25th.
Virginie Bernard, Véronique Brunaud, Alain Lecharny.
Topological organisation of regulatory elements and transcriptional activity by Arabidopsis thaliana.
Statistics for Systems Biology (SSB (french)).
Jouy en Josas, France. 2007, March 13rd.
Virginie Bernard, Véronique Brunaud, Carine Serizet, Marie-Laure Martin Magniette,
Michel Caboche, Alain Lecharny.
Selection of candidate motifs for the regulation of Arabidopsis thaliana gene expression
based on topological criteria.
French conference on Computational Biology and Bioinformatics, (JOBIM),
Bordeaux, France. 2006, july 5th.